Multi-Omics for Understanding Climate Change (MUCC) v2.0.0

Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands.

2025.12.0580

RNAmigos2

RNAmigos2: accelerated structure-based RNA virtual screening with deep graph learning.

2025.12.0420

SCLIMS

Integrative single-cell metabolomics and phenotypic profiling reveals metabolic heterogeneity of cellular oxidation and senescence.

2025.12.0400

DropAI

AI-driven high-throughput droplet screening of cell-free gene expression.

2025.12.0400

CataPro

Robust enzyme discovery and engineering with deep learning using CataPro.

2025.12.0400

TopEC

TopEC: prediction of Enzyme Commission classes by 3D graph neural networks and localized 3D protein descriptor.

2025.12.0400

Ninetails

Direct profiling of non-adenosines in poly(A) tails of endogenous and therapeutic mRNAs with Ninetails.

2025.12.0400

GraphBAN

GraphBAN: An inductive graph-based approach for enhanced prediction of compound-protein interactions.

2025.12.0400

GPOSC-Net

Predicting orthognathic surgery results as postoperative lateral cephalograms using graph neural networks and diffusion models.

2025.12.0400

DTIAM

DTIAM: a unified framework for predicting drug-target interactions, binding affinities and drug mechanisms.

2025.12.0400

VaDeSC-EHR

Deep representation learning for clustering longitudinal survival data from electronic health records.

2025.12.0400

DeepPlant

Accurate cross-species 5mC detection for Oxford Nanopore sequencing in plants with DeepPlant.

2025.12.0400

AdsMT

A multi-modal transformer for predicting global minimum adsorption energy.

2025.12.0400

ESL-PSC

Evolutionary sparse learning reveals the shared genetic basis of convergent traits.

2025.12.0400

CodonTransformer

CodonTransformer: a multispecies codon optimizer using context-aware neural networks.

2025.12.0400

InvestiGUT

Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut.

2025.12.0400

Spatiopath

Statistical analysis of spatial patterns in tumor microenvironment images.

2025.12.0400

AbExp

Aberrant gene expression prediction across human tissues.

2025.12.0400

SPAGxECCT

Efficient and accurate framework for genome-wide gene-environment interaction analysis in large-scale biobanks.

2025.12.0400

SIMVI

SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data.

2025.12.0400

Dragonfly

Portable molecular diagnostic platform for rapid point-of-care detection of mpox and other diseases.

2025.12.0400

SAIUnit

Integrating physical units into high-performance AI-driven scientific computing.

2025.12.0400

DIA-BERT

DIA-BERT: pre-trained end-to-end transformer models for enhanced DIA proteomics data analysis.

2025.12.0400

EpiVerse

Unveiling chromatin dynamics with virtual epigenome.

2025.12.0400

CaliAli

A comprehensive suite for extracting neuron signals across multiple sessions in one-photon calcium imaging.

2025.12.0400

Tensor-FLAMINGO

Tensor-FLAMINGO unravels the complexity of single-cell spatial architectures of genomes at high-resolution.

2025.12.0400

DataSAIL

Data splitting to avoid information leakage with DataSAIL.

2025.12.0400

FlexFair

Achieving flexible fairness metrics in federated medical imaging.

2025.12.0400

MindGlide

Enabling new insights from old scans by repurposing clinical MRI archives for multiple sclerosis research.

2025.12.0410

LEOPARD

LEOPARD: missing view completion for multi-timepoint omics data via representation disentanglement and temporal knowledge transfer.

2025.12.0400

kanpig

K-mer analysis of long-read alignment pileups for structural variant genotyping.

2025.12.0400

JointPRS

JointPRS: A data-adaptive framework for multi-population genetic risk prediction incorporating genetic correlation.

2025.12.0400

TACIT

Deconvolution of cell types and states in spatial multiomics utilizing TACIT.

2025.12.0400

WarpDemuX

Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing.

2025.12.0400

TRESOR

Therapeutic target prediction for orphan diseases integrating genome-wide and transcriptome-wide association studies.

2025.12.0400

scPRINT

scPRINT: pre-training on 50 million cells allows robust gene network predictions.

2025.12.0400

TRAPT

TRAPT: a multi-stage fused deep learning framework for predicting transcriptional regulators based on large-scale epigenomic data.

2025.12.0400

SourceCheckup

An automated framework for assessing how well LLMs cite relevant medical references.

2025.12.0400

FLAME

A modular artificial intelligence framework to facilitate fluorophore design.

2025.12.0400

RL-GenRisk

Identifying potential risk genes for clear cell renal cell carcinoma with deep reinforcement learning.

2025.12.0400