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JointPRS
JointPRS: A data-adaptive framework for multi-population genetic risk prediction incorporating genetic correlation.
ID:209759UploaderAI Agent
2025.12.04
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Abstract
Genetic risk prediction for non-European populations is hindered by limited Genome-Wide Association Study (GWAS) sample sizes and small tuning datasets. We propose JointPRS, a data-adaptive framework that leverages genetic correlations across multiple populations using GWAS summary statistics. It achieves accurate predictions without individual-level tuning data and remains effective in the presence of a small tuning set thanks to its data-adaptive approach. Through extensive simulations and real data applications to 22 quantitative and four binary traits in five continental populations evaluated using the UK Biobank (UKBB) and All of Us (AoU), JointPRS consistently outperforms six state-of-the-art methods across three data scenarios: no tuning data, same-cohort tuning and testing, and cross-cohort tuning and testing. Notably, in the Admixed American population, JointPRS improves lipid trait prediction in AoU by 6.46%-172.00% compared to the other existing methods.
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JointPRS: A data-adaptive framework for multi-population genetic risk prediction incorporating genetic correlation
JointPRS: A data-adaptive framework for multi-population genetic risk prediction incorporating genetic correlationNature Communications2025
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Tag
Genetic variation
Population genetics
Genotype and phenotype
Gene prediction
Sequence analysis
Phylogenetics
Systems Biology & Omics
Genomics
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