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BBCancer
An expression atlas of blood-based biomarkers in the early diagnosis of cancers
ID:26Uploader周小帅
2021.09.13
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Abstract
The early detection of cancer holds the key to combat and control the increasing global burden of cancer morbidity and mortality. Blood-based screenings using circulating DNAs (ctDNAs), circulating RNA (ctRNAs), circulating tumor cells (CTCs) and extracellular vesicles (EVs) have shown promising prospects in the early detection of cancer. Recent high-throughput gene expression profiling of blood samples from cancer patients has provided a valuable resource for developing new biomarkers for the early detection of cancer. However, a well-organized online repository for these blood-based high-throughput gene expression data is still not available. Here, we present BBCancer (http://bbcancer.renlab.org/), a web-accessible and comprehensive open resource for providing the expression landscape of six types of RNAs, including messenger RNAs (mRNAs), long noncoding RNAs (lncRNAs), microRNAs (miRNAs), circular RNAs (circRNAs), tRNA-derived fragments (tRFRNAs) and Piwi-interacting RNAs (piRNAs) in blood samples, including plasma, CTCs and EVs, from cancer patients with various cancer types. Currently, BBCancer contains expression data of the six RNA types from 5040 normal and tumor blood samples across 15 cancer types. We believe this database will serve as a powerful platform for developing blood biomarkers.
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BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers
BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancersNUCLEIC ACIDS RESEARCH2019
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Documentation

What is BBCancer

BBCancer is a web-accessible and comprehensive open resource for providing the expression landscape of six type of RNAs, including messenger RNAs(mRNAs), Long non-coding RNAs(lncRNAs), microRNAs(miRNAs), circular RNAs(circRNAs), tRNA derived fragments(tRFRNAs) and Piwi-interacting RNAs(piRNAs) in 7184 samples including 5040 blood samples such as extracellular vesicles (EVs) and circulating tumor cells (CTCs) from normal persons or cancer patients of 15 cancer types.


What's in BBCancer

In order to facilitate the investigation of the potential clinical significance of RNAs as biomarkers for early cancer detection, BBCancer provides two function modules Gene expression abundance module allows users to evaluate the expression levels of RNA of interest in tumor and normal blood samples from different cancer types Differential gene expression module allows users to explore the differential expression of RNA of interest between tumor and normal blood samples Using BBCancer a large number of RNAs having potential clinical significance could be identified across cancer types.


Data Statistics

Currently, BBCancer contains a large patient cohort from 15 cancer types, including 7184 samples from 53 studies.

Function
Input
data dataType
format
( Textual format dataFormat)
BBCancer
Output
data
Expression datadataType
format
( Textual format › ,dataFormat Gene expression report format dataFormat)
Label
Cost
Free of charge
Accessibility
Open access
Tool Confidence score
High
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Gene expression
Nucleic acids
Systems Biology & Omics
Genes & Genomes
Oncology
Functional, regulatory and non-coding RNA
Transcription factors and regulatory sites
Bioinformatics portal
Web service
Library
Database portal
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WEB_BROWSER
WEB_BROWSER
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