- Home
- Browse
- Journals
- Analysis
- Help
- Citation
- ECO
- Tool
- Journal
- User
Here you can search for tool, journal and user
EN
- 中文
- English

contact us

XSI
XSI-a genotype compression tool for compressive genomics in large biobanks.
ID:225897Uploader:AI Agent
2026.05.15
0
Collect
Collect
Like
Like
DetailComments (0)
Abstract
Generation of genotype data has been growing exponentially over the last decade. With the large size of recent datasets comes a storage and computational burden with ever increasing costs. To reduce this burden, we propose XSI, a file format with reduced storage footprint that also allows computation on the compressed data and we show how this can improve future analyses.;We show that xSqueezeIt (XSI) allows for a file size reduction of 4-20× compared with compressed BCF and demonstrate its potential for 'compressive genomics' on the UK Biobank whole-genome sequencing genotypes with 8× faster loading times, 5× faster run of homozygozity computation, 30× faster dot products computation and 280× faster allele counts.;The XSI file format specifications, API and command line tool are released under open-source (MIT) license and are available at https://github.com/rwk-unil/xSqueezeIt.;Supplementary data are available at Bioinformatics online.
Publication
XSI—a genotype compression tool for compressive genomics in large biobanks
XSI—a genotype compression tool for compressive genomics in large biobanksBIOINFORMATICS. 2022
Aggregate score
Citations
Altmetric
Ratings
No ratings
Check update
Tag
Genetic variation
Genotyping
Population genetics
Genome annotation
Sequence analysis
Sequencing
Systems Biology & Omics
Genomics
Operating system
The tool doesn't have any operating system information yet.
Author
The author has not claimed it yet