ELIGOS

Decoding the epitranscriptional landscape from native RNA sequences.

2026.05.1560

ModelSEED Biochemistry Database

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

2026.05.1520

CoBold

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo.

2026.05.1500

PROMISCUOUS 2.0

PROMISCUOUS 2.0: a resource for drug-repositioning.

2026.05.1520

Oligo-ASST

Optimized design of antisense oligomers for targeted rRNA depletion.

2026.05.1500

MENdel

Deploying MMEJ using MENdel in precision gene editing applications for gene therapy and functional genomics.

2026.05.1500

DeepFun

Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.

2026.05.1500

MSI-tracer

NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR.

2026.05.1500

ECF Hub

Expansion and re-classification of the extracytoplasmic function (ECF) σ factor family.

2026.05.1520

CPGD

Network controllability-based algorithm to target personalized driver genes for discovering combinatorial drugs of individual patients.

2026.05.1500

BatchBench

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench.

2026.05.1500

SPOTlight

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes.

2026.05.1500

g4dbr

DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions.

2026.05.1500

Complex Portal

Analysing the yeast complexome-the Complex Portal rising to the challenge.

2026.05.1520

KERA

KERA: analysis tool for multi-process, multi-state single-molecule data.

2026.05.1500

SPADE

Discovery of molecular features underlying the morphological landscape by integrating spatial transcriptomic data with deep features of tissue images.

2026.05.1510

ICAnet

Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration.

2026.05.1500

SCOUT

Accurate single-cell genotyping utilizing information from the local genome territory.

2026.05.1500

Bound2Learn

Bound2Learn: a machine learning approach for classification of DNA-bound proteins from single-molecule tracking experiments.

2026.05.1500

MASS

Modeling multi-species RNA modification through multi-task curriculum learning.

2026.05.1500

kASA

Taxonomic analysis of metagenomic data with kASA.

2026.05.1500

SHAPELoop

Characteristic chemical probing patterns of loop motifs improve prediction accuracy of RNA secondary structures.

2026.05.1500

MrHAMER

MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.

2026.05.1500

ScarMapper

Marker-free quantification of repair pathway utilization at Cas9-induced double-strand breaks.

2026.05.1500

SATORI

A self-attention model for inferring cooperativity between regulatory features.

2026.05.1500

dSPRINT

dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains.

2026.05.1500

mtSC

Integrating multiple references for single-cell assignment.

2026.05.1500

smORFer

smORFer: a modular algorithm to detect small ORFs in prokaryotes.

2026.05.1500

VirusViz

VirusViz: comparative analysis and effective visualization of viral nucleotide and amino acid variants.

2026.05.1500

CROssBAR

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.

2026.05.1500

m6Aboost

Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning.

2026.05.1500

CliqueSNV

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.

2026.05.1500

TRAPID 2.0

TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes.

2026.05.1580

deepBlink

deepBlink: threshold-independent detection and localization of diffraction-limited spots.

2026.05.1500

iTARGEX

iTARGEX analysis of yeast deletome reveals novel regulators of transcriptional buffering in S phase and protein turnover.

2026.05.1500

K2Taxonomer

Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data.

2026.05.1500

TISCA

Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons.

2026.05.1500

LongRepMarker

A sensitive repeat identification framework based on short and long reads.

2026.05.1500

DMRcate

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate.

2026.05.1520

APSiC

Systematic identification of novel cancer genes through analysis of deep shRNA perturbation screens.

2026.05.1540