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BRIEFINGS IN BIOINFORMATICS
Briefings in Bioinformatics is an international forum for researchers and educators in the life sciences. The journal will also be of interest to mathematicians, statisticians and computer scientists who apply their work to biological problems. The journal publishes reviews for the users of databases and analytical tools of contemporary genetics, molecular and systems biology and is unique in providing practical help and guidance to the non-specialist in computerized methodology. Papers range in scope and depth, from the introductory level to specific details of protocols and analyses encompassing bacterial, plant, fungal, animal and human data. Detailed subject areas covered by the journal include: genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signalling pathways, structure determination and function prediction, phylogenetic studies and education and training.
JCR Abbreviated TitleBRIEF BIOINFORM
ISSN1467-5463
Impact Factor7.300
All
2025
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2018
1956 tools

SELECTOR

Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework.

No ratings

2026.05.1500

DeepCPP

DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction.

No ratings

2026.05.1500

MoonFinder v2.0

A network-based algorithm for the identification of moonlighting noncoding RNAs and its application in sepsis.

No ratings

2026.05.1500

iLoc-mRNA

Design powerful predictor for mRNA subcellular location prediction in Homo sapiens.

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2026.05.1500

miRactDB

miRactDB characterizes miRNA-gene relation switch between normal and cancer tissues across pan-cancer.

No ratings

2026.05.1500

MDeep

A novel deep learning method for predictive modeling of microbiome data.

No ratings

2026.05.1500

iPiDi-PUL

iPiDi-PUL: identifying Piwi-interacting RNA-disease associations based on positive unlabeled learning.

No ratings

2026.05.1500

iPRIVATES

A novel privacy-preserving federated genome-wide association study framework and its application in identifying potential risk variants in ankylosing spondylitis.

No ratings

2026.05.1500

JRIM

Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data.

No ratings

2026.05.1500

moldrugeffectsdb

Scoring functions for drug-effect similarity.

No ratings

2026.05.1500

CodAn

CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts.

No ratings

2026.05.1500

MetaFS

MetaFS: Performance assessment of biomarker discovery in metaproteomics.

No ratings

2026.05.1500

AntiCP 2.0

AntiCP 2.0: an updated model for predicting anticancer peptides.

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2026.05.1500

Virtual Rat

Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development.

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2026.05.1500

GATMDA

Predicting human microbe-disease associations via graph attention networks with inductive matrix completion.

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2026.05.1500

DrugSimDB

A comprehensive integrated drug similarity resource for in-silico drug repositioning and beyond.

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2026.05.1500

PRIMATA-APA

The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer.

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2026.05.1500

PNIDB

An in silico approach to identification, categorization and prediction of nucleic acid binding proteins.

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2026.05.1500

Meta-i6mA

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework.

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2026.05.1500

LncAS2Cancer

LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers.

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2026.05.1500

m6Sig

Molecular characterization, biological function, tumor microenvironment association and clinical significance of m6A regulators in lung adenocarcinoma.

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2026.05.1500

QSIdb

QSIdb: quorum sensing interference molecules.

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2026.05.1500

fastv

A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data.

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2026.05.1500

AlzRiskMR database

AlzRiskMR database: an online database for the impact of exposure factors on Alzheimer's disease.

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2026.05.1500

MCCS

MCCS: a novel recognition pattern-based method for fast track discovery of anti-SARS-CoV-2 drugs.

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2026.05.1500

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files.

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2026.05.1500

CoroAnnoter

Compositional diversity and evolutionary pattern of coronavirus accessory proteins.

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2026.05.1500

EPI-DLMH

Predicting enhancer-promoter interactions by deep learning and matching heuristic.

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2026.05.1500

LAGCN

Predicting drug-disease associations through layer attention graph convolutional network.

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2026.05.1500

NAMS

NAMS webserver: coding potential assessment and functional annotation of plant transcripts.

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2026.05.1500

machine-learning-with-ontologies

Semantic similarity and machine learning with ontologies.

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2026.05.1500

GuidingNet

GuidingNet: revealing transcriptional cofactor and predicting binding for DNA methyltransferase by network regularization.

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2026.05.1500

ReGear

A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear.

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2026.05.1500

iDMer

iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak.

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2026.05.1500

CAPE

Systematic characterization and prediction of coenzyme A-associated proteins using sequence and network information.

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2026.05.1500

nMAGMA

nMAGMA: a network-enhanced method for inferring risk genes from GWAS summary statistics and its application to schizophrenia.

No ratings

2026.05.1520

m7G-IFL

Iterative feature representation algorithm to improve the predictive performance of N7-methylguanosine sites.

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2026.05.1500

Stack-ORI

Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework.

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2026.05.1500

FEATS

FEATS: feature selection-based clustering of single-cell RNA-seq data.

No ratings

2026.05.1500

NetCoMi

NetCoMi: network construction and comparison for microbiome data in R.

No ratings

2026.05.1500

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