MATHLA

MATHLA: a robust framework for HLA-peptide binding prediction integrating bidirectional LSTM and multiple head attention mechanism.

2026.05.1520

recoup

recoup: flexible and versatile signal visualization from next generation sequencing.

2026.05.1520

MicrobeAnnotator

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes.

2026.05.1520

MiBiOmics

MiBiOmics: an interactive web application for multi-omics data exploration and integration.

2026.05.1540

SCC

SCC: an accurate imputation method for scRNA-seq dropouts based on a mixture model.

2026.05.1520

CHICKN

CHICKN: extraction of peptide chromatographic elution profiles from large scale mass spectrometry data by means of Wasserstein compressive hierarchical cluster analysis.

2026.05.1520

S-conLSH

S-conLSH: alignment-free gapped mapping of noisy long reads.

2026.05.1500

ComHub

ComHub: Community predictions of hubs in gene regulatory networks.

2026.05.1520

Esmraldi

Esmraldi: efficient methods for the fusion of mass spectrometry and magnetic resonance images.

2026.05.1500

ViR

ViR: a tool to solve intrasample variability in the prediction of viral integration sites using whole genome sequencing data.

2026.05.1500

chooseR

Selecting single cell clustering parameter values using subsampling-based robustness metrics.

2026.05.1500

SOM-VN

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.

2026.05.1500

TARA++

Data-driven biological network alignment that uses topological, sequence, and functional information.

2026.05.1500

cognac

cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets.

2026.05.1500

A graph-based algorithm for detecting rigid domains in protein structures

A graph-based algorithm for detecting rigid domains in protein structures.

2026.05.1500

H2V

H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection.

2026.05.1500

GO2PLS

Statistical integration of two omics datasets using GO2PLS.

2026.05.1500

InstantDL

InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification.

2026.05.1500

barCoder

barCoder: a tool to generate unique, orthogonal genetic tags for qPCR detection.

2026.05.1500

Mercator

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator.

2026.05.1500

geneRFinder

geneRFinder: gene finding in distinct metagenomic data complexities.

2026.05.1500

CHARTS

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets.

2026.05.1500

PartSeg

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.

2026.05.1500

WACS

WACS: improving ChIP-seq peak calling by optimally weighting controls.

2026.05.1500

MeltingPlot

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data.

2026.05.1500

Dualmarker

Dualmarker: a flexible toolset for exploratory analysis of combinatorial dual biomarkers for clinical efficacy.

2026.05.1500

DeltaNeTS+

DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks.

2026.05.1500

miTAR

miTAR: a hybrid deep learning-based approach for predicting miRNA targets.

2026.05.1500

MBMDRClassifieR

Empowering individual trait prediction using interactions for precision medicine.

2026.05.1500

SLIDR and SLOPPR

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data.

2026.05.1500

CytoGLMM

CytoGLMM: conditional differential analysis for flow and mass cytometry experiments.

2026.05.1520

mtDNAcombine

mtDNAcombine: tools to combine sequences from multiple studies.

2026.05.1500

HiCKey

Deciphering hierarchical organization of topologically associated domains through change-point testing.

2026.05.1500

DnoisE

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography.

2026.05.1500

IPCARF

IPCARF: improving lncRNA-disease association prediction using incremental principal component analysis feature selection and a random forest classifier.

2026.05.1500

HARVESTMAN

HARVESTMAN: a framework for hierarchical feature learning and selection from whole genome sequencing data.

2026.05.1500

RPRes

A novel end-to-end method to predict RNA secondary structure profile based on bidirectional LSTM and residual neural network.

2026.05.1500

CytoTree

CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data.

2026.05.1500

scConsensus

scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data.

2026.05.1500

SSC-format

Performance improvement for a 2D convolutional neural network by using SSC encoding on protein-protein interaction tasks.

2026.05.1500